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1. Lee, J. K., Enciso, G. A., Boassa, D., Chander, C. N., Lou, T. H., Pairawan, S. S., Guo, M. C., Wan, F. Y. M., Ellisman, M. H., Sutterlin, C., Tan, M., (2018), "Replication-dependent size reduction precedes differentiation in Chlamydia trachomatis", Nat Commun, 2018/01/05, 9, 1: pg: 45, Jan 3, 2041-1723, (DOI: 10.1038/s41467-017-02432-0).
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2. Liu, J., Lee, I., Feng, H. Z., Galen, S. S., Huttemann, P. P., Perkins, G. A., Jin, J. P., Huttemann, M., Malek, M. H., (2018), "Aerobic exercise preconception and during pregnancy enhances oxidative capacity in the hindlimb muscles of mice offspring", J Strength Cond Res, 2018/01/09: Jan 3, 1064-8011, (DOI: 10.1519/jsc.0000000000002416).
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3. McGlynn, S. E., Chadwick, G. L., O'Neill, A., Mackey, M., Thor, A., Deerinck, T. J., Ellisman, M. H., Orphan, V. J., (2018), "Subgroup characteristics of marine methane-oxidizing ANME-2 archaea and their syntrophic partners revealed by integrated multimodal analytical microscopy", Appl Environ Microbiol, 2018/04/08: Apr 6, 0099-2240, (DOI: 10.1128/aem.00399-18).
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4. Shim, M. S., Kim, K. Y., Bu, J. H., Nam, H. S., Jeong, S. W., Park, T. L., Ellisman, M. H., Weinreb, R. N., Ju, W. K., (2018), "Elevated intracellular cAMP exacerbates vulnerability to oxidative stress in optic nerve head astrocytes", Cell Death Dis, 2018/02/21, 9, 3: pg: 285, Feb 19, (DOI: 10.1038/s41419-017-0171-8).
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5. Tsang, T. K., Bushong, E. A., Boassa, D., Hu, J., Romoli, B., Phan, S., Dulcis, D., Su, C. Y., Ellisman, M. H., (2018), "High-quality ultrastructural preservation using cryofixation for 3D electron microscopy of genetically labeled tissues", Elife, 2018/05/12, 7: May 11, 2050-084x, (DOI: 10.7554/eLife.35524).
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6. Katchalski, T., Case, T., Kim, K. Y., Ramachandra, R., Bushong, E. A., Deerinck, T. J., Haberl, M. G., Mackey, M. R., Peltier, S., Castillon, G. A., Fujikawa, N., Lawrence, A. R., Ellisman, M. H., (2018), "Iron-specific Signal Separation from within Heavy Metal Stained Biological Samples Using X-Ray Microtomography with Polychromatic Source and Energy-Integrating Detectors", Sci Rep, 2018/05/17, 8, 1: pg: 7553, May 15, 2045-2322, (DOI: 10.1038/s41598-018-25099-z).
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7. Yamaguchi, R., Perkins, G., (2018), "Animal models for studying tumor microenvironment (TME) and resistance to lymphocytic infiltration", Cancer Biol Ther, 2018/05/04: pg: 1-10, May 3, 1538-4047, (DOI: 10.1080/15384047.2018.1470722).
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8. Zerbi, V., Ielacqua, G. D., Markicevic, M., Haberl, M. G., Ellisman, M. H., A, A. Bhaskaran, Frick, A., Rudin, M., Wenderoth, N., (2018), "Dysfunctional Autism Risk Genes Cause Circuit-Specific Connectivity Deficits With Distinct Developmental Trajectories", Cereb Cortex, 2018/06/15, 28, 7: pg: 2495-2506, Jul 1, 1047-3211, (DOI: 10.1093/cercor/bhy046).
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9. Ilouz, R., Lev-Ram, V., Bushong, E. A., Stiles, T. L., Friedmann-Morvinski, D., Douglas, C., Goldberg, G., Ellisman, M. H., Taylor, S. S., (2017), "Isoform-specific subcellular localization and function of protein kinase A identified by mosaic imaging of mouse brain", Elife, 2017/01/13, 6: Jan 12, 2050-084x, (DOI: 10.7554/eLife.17681).
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10. Hammerling, B. C., Najor, R. H., Cortez, M. Q., Shires, S. E., Leon, L. J., Gonzalez, E. R., Boassa, D., Phan, S., Thor, A., Jimenez, R. E., Li, H., Kitsis, R. N., Dorn Ii, G. W., Sadoshima, J., Ellisman, M. H., Gustafsson, A. B., (2017), "A Rab5 endosomal pathway mediates Parkin-dependent mitochondrial clearance", Nat Commun, 2017/01/31, 8: pg: 14050, Jan 30, 2041-1723, (DOI: 10.1038/ncomms14050).
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11. de Vivo, L., Bellesi, M., Marshall, W., Bushong, E. A., Ellisman, M. H., Tononi, G., Cirelli, C., (2017), "Ultrastructural evidence for synaptic scaling across the wake/sleep cycle", Science, 2017/02/06, 355, 6324: pg: 507-510, Feb 03, 0036-8075, (DOI: 10.1126/science.aah5982).
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12. Wan, X., Katchalski, T., Churas, C., Ghosh, S., Phan, S., Lawrence, A., Hao, Y., Zhou, Z., Chen, R., Chen, Y., Zhang, F., Ellisman, M. H., (2017), "Electron tomography simulator with realistic 3D phantom for evaluation of acquisition, alignment and reconstruction methods", J Struct Biol, 2017/04/11: Apr 06, 1047-8477, (DOI: 10.1016/j.jsb.2017.04.002).
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13. Su, F. Y., Bushong, E. A., Deerinck, T. J., Seo, K., Herrera, S., Graeve, O. A., Kisailus, D., Lubarda, V. A., McKittrick, J., (2017), "Spines of the porcupine fish: Structure, composition, and mechanical properties", J Mech Behav Biomed Mater, 2017/03/10: Feb 28, 1878-0180, (DOI: 10.1016/j.jmbbm.2017.02.029).
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14. Stowell, C., Burgoyne, C. F., Tamm, E. R., Ethier, C. R., (2017), "Biomechanical aspects of axonal damage in glaucoma: A brief review", Exp Eye Res, 2017/02/23, 157: pg: 13-19, Apr, 0014-4835, (DOI: 10.1016/j.exer.2017.02.005).
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15. Sando, R., Bushong, E., Zhu, Y., Huang, M., Considine, C., Phan, S., Ju, S., Uytiepo, M., Ellisman, M., Maximov, A., (2017), "Assembly of Excitatory Synapses in the Absence of Glutamatergic Neurotransmission", Neuron, 2017/04/21, 94, 2: pg: 312-321.e3, Apr 19, 0896-6273, (DOI: 10.1016/j.neuron.2017.03.047).
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16. Han, S., Udeshi, N. D., Deerinck, T. J., Svinkina, T., Ellisman, M. H., Carr, S. A., Ting, A. Y., (2017), "Proximity Biotinylation as a Method for Mapping Proteins Associated with mtDNA in Living Cells", Cell Chem Biol, 2017/02/28, 24, 3: pg: 404-414, Mar 16, (DOI: 10.1016/j.chembiol.2017.02.002).
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17. Falkenberg, C. V., Azeloglu, E. U., Stothers, M., Deerinck, T. J., Chen, Y., He, J. C., Ellisman, M. H., Hone, J. C., Iyengar, R., Loew, L. M., (2017), "Fragility of foot process morphology in kidney podocytes arises from chaotic spatial propagation of cytoskeletal instability", PLoS Comput Biol, 2017/03/17, 13, 3: pg: e1005433, Mar, 1553-734x, (DOI: 10.1371/journal.pcbi.1005433).
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18. Cao, M., Wu, Y., Ashrafi, G., McCartney, A. J., Wheeler, H., Bushong, E. A., Boassa, D., Ellisman, M. H., Ryan, T. A., De Camilli, P., (2017), "Parkinson Sac Domain Mutation in Synaptojanin 1 Impairs Clathrin Uncoating at Synapses and Triggers Dystrophic Changes in Dopaminergic Axons", Neuron, 2017/02/24, 93, 4: pg: 882-896.e5, Feb 22, 0896-6273, (DOI: 10.1016/j.neuron.2017.01.019).
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19. Solga, AC, Toonen, JA, Pan, Y, Cimino, PJ, Ma, Y, Castillon, GA, Gianino, SM, Ellisman, MH, Lee, DY, Gutmann, DH, (2017), "The cell of origin dictates the temporal course of neurofibromatosis-1 (Nf1) low-grade glioma formation.", Oncotarget: 1949-2553
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20. Ou, H. D., Phan, S., Deerinck, T. J., Thor, A., Ellisman, M. H., O'Shea, C. C., (2017), "ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells", Science, 2017/07/29, 357, 6349: Jul 28, 0036-8075, (DOI: 10.1126/science.aag0025).
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21. Koehler, C. L., Perkins, G. A., Ellisman, M. H., Jones, D. L., (2017), "Pink1 and Parkin regulate Drosophila intestinal stem cell proliferation during stress and aging", J Cell Biol, 2017/07/01: Jun 29, 0021-9525, (DOI: 10.1083/jcb.201610036).
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22. Goo, M. S., Sancho, L., Slepak, N., Boassa, D., Deerinck, T. J., Ellisman, M. H., Bloodgood, B. L., Patrick, G. N., (2017), "Activity-dependent trafficking of lysosomes in dendrites and dendritic spines", J Cell Biol, 2017/06/21: Jun 19, 0021-9525, (DOI: 10.1083/jcb.201704068).
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23. Sastri, M., Darshi, M., Mackey, M., Ramachandra, R., Ju, S., Phan, S., Adams, S., Stein, K., Douglas, C. R., Kim, J. J., Ellisman, M. H., Taylor, S. S., Perkins, G. A., (2017), "Sub-mitochondrial localization of genetic-tagged MIB interacting partners: Mic19, Mic60 and Sam50", J Cell Sci, 2017/08/16: Aug 14, 0021-9533, (DOI: 10.1242/jcs.201400).
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24. Noma, K., Goncharov, A., Ellisman, M. H., Jin, Y., (2017), "Microtubule-dependent ribosome localization in C. elegans neurons", Elife, 2017/08/03, 6: Aug 02, 2050-084x, (DOI: 10.7554/eLife.26376).
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25. Martell, J. D., Deerinck, T. J., Lam, S. S., Ellisman, M. H., Ting, A. Y., (2017), "Electron microscopy using the genetically encoded APEX2 tag in cultured mammalian cells", Nat Protoc, 2017/08/11, 12, 9: pg: 1792-1816, Sep, 1750-2799, (DOI: 10.1038/nprot.2017.065).
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26. Vollnhals, F., Audinot, J. N., Wirtz, T., Mercier-Bonin, M., Fourquaux, I., Schroeppel, B., Kraushaar, U., Lev-Ram, V., Ellisman, M. H., Eswara, S., (2017), "Correlative Microscopy Combining Secondary Ion Mass Spectrometry and Electron Microscopy: Comparison of Intensity-Hue-Saturation and Laplacian Pyramid Methods for Image Fusion", Anal Chem, 2017/09/14, 89, 20: pg: 10702-10710, Oct 17, 0003-2700, (DOI: 10.1021/acs.analchem.7b01256).
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27. Petersen, M. A., Ryu, J. K., Chang, K. J., Etxeberria, A., Bardehle, S., Mendiola, A. S., Kamau-Devers, W., Fancy, S. P. J., Thor, A., Bushong, E. A., Baeza-Raja, B., Syme, C. A., Wu, M. D., Rios Coronado, P. E., Meyer-Franke, A., Yahn, S., Pous, L., Lee, J. K., Schachtrup, C., Lassmann, H., Huang, E. J., Han, M. H., Absinta, M., Reich, D. S., Ellisman, M. H., Rowitch, D. H., Chan, J. R., Akassoglou, K., (2017), "Fibrinogen Activates BMP Signaling in Oligodendrocyte Progenitor Cells and Inhibits Remyelination after Vascular Damage", Neuron, 2017/11/07: Oct 19, 0896-6273, (DOI: 10.1016/j.neuron.2017.10.008).
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28. Deerinck, T. J., Shone, T. M., Bushong, E. A., Ramachandra, R., Peltier, S. T., Ellisman, M. H., (2017), "High-performance serial block-face SEM of nonconductive biological samples enabled by focal gas injection-based charge compensation", J Microsc, 2017/12/02: Dec 1, 0022-2720, (DOI: 10.1111/jmi.12667).
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29. Churas, C., Perez, A. J., Hakozaki, H., Wong, W., Lee, D., Peltier, S. T., Ellisman, M. H., (2017), "Probability Map Viewer: near real-time probability map generator of serial block electron microscopy collections", Bioinformatics, 2017/09/29, 33, 19: pg: 3145-3147, Oct 1, 1367-4803, (DOI: 10.1093/bioinformatics/btx376).
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30. Thomas, J. L., Pham, H., Li, Y., Hall, E., Perkins, G. A., Ali, S. S., Patel, H. H., Singh, P., (2017), "Hypoxia-inducible factor-1alpha activation improves renal oxygenation and mitochondrial function in early chronic kidney disease", Am J Physiol Renal Physiol, 2017/03/24, 313, 2: pg: F282-f290, Aug 1, 1522-1466, (DOI: 10.1152/ajprenal.00579.2016).
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31. Zhao, H., Perkins, G. A., Yao, H., Callacondo, D., Appenzeller, O., Ellisman, M., La Spada, A. R., Haddad, G. G., (2017), "MITOCHONDRIAL DYSFUNCTION IN IPSC-DERIVED NEURONS OF SUBJECTS WITH CHRONIC MOUNTAIN SICKNESS", J Appl Physiol (1985), 2018/01/24: Dec 21, 0161-7567, (DOI: 10.1152/japplphysiol.00689.2017).
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32. Rubio-Marrero, E. N., Vincelli, G., Jeffries, C. M., Shaikh, T. R., Pakos, I. S., Ranaivoson, F. M., von Daake, S., Demeler, B., De Jaco, A., Perkins, G., Ellisman, M. H., Trewhella, J., Comoletti, D., (2016), "Structural Characterization of the Extracellular Domain of CASPR2 and Insights into Its Association with the Novel Ligand Contactin1", J Biol Chem, 2016/01/02, 291, 11: pg: 5788-802, Mar 11, 0021-9258, (DOI: 10.1074/jbc.M115.705681).
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33. Zhong, Z., Umemura, A., Sanchez-Lopez, E., Liang, S., Shalapour, S., Wong, J., He, F., Boassa, D., Perkins, G., Ali, S. R., McGeough, M. D., Ellisman, M. H., Seki, E., Gustafsson, A. B., Hoffman, H. M., Diaz-Meco, M. T., Moscat, J., Karin, M., (2016), "NF-kappaB Restricts Inflammasome Activation via Elimination of Damaged Mitochondria", Cell, 2016/02/27, 164, 5: pg: 896-910, Feb 25, 0092-8674, (DOI: 10.1016/j.cell.2015.12.057).
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34. van Baren, M. J., Bachy, C., Reistetter, E. N., Purvine, S. O., Grimwood, J., Sudek, S., Yu, H., Poirier, C., Deerinck, T. J., Kuo, A., Grigoriev, I. V., Wong, C. H., Smith, R. D., Callister, S. J., Wei, C. L., Schmutz, J., Worden, A. Z., (2016), "Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants", BMC Genomics, 2016/04/01, 17, 1: pg: 267, 1471-2164, (DOI: 10.1186/s12864-016-2585-6).
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35. Tasel, S. F., Mumcuoglu, E. U., Hassanpour, R. Z., Perkins, G., (2016), "A validated active contour method driven by parabolic arc model for detection and segmentation of mitochondria", J Struct Biol, 2016/03/10: Mar 5, 1047-8477, (DOI: 10.1016/j.jsb.2016.03.002).
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36. Pasqua, T., Mahata, S., Bandyopadhyay, G. K., Biswas, A., Perkins, G. A., Sinha-Hikim, A. P., Goldstein, D. S., Eiden, L. E., Mahata, S. K., (2016), "Impact of Chromogranin A deficiency on catecholamine storage, catecholamine granule morphology and chromaffin cell energy metabolism in vivo", Cell Tissue Res, 2015/11/18, 363, 3: pg: 693-712, Mar, 0302-766x, (DOI: 10.1007/s00441-015-2316-3).
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37. Ngo, J. T., Adams, S. R., Deerinck, T. J., Boassa, D., Rodriguez-Rivera, F., Palida, S. F., Bertozzi, C. R., Ellisman, M. H., Tsien, R. Y., (2016), "Click-EM for imaging metabolically tagged nonprotein biomolecules", Nat Chem Biol, 2016/04/26: Apr 25, 1552-4450, (DOI: 10.1038/nchembio.2076).
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38. Moss, J., Gebara, E., Bushong, E. A., Sanchez-Pascual, I., O'Laoi, R., El M'Ghari, I., Kocher-Braissant, J., Ellisman, M. H., Toni, N., (2016), "Fine processes of Nestin-GFP-positive radial glia-like stem cells in the adult dentate gyrus ensheathe local synapses and vasculature", Proc Natl Acad Sci U S A, 2016/04/20: Apr 18, 0027-8424, (DOI: 10.1073/pnas.1514652113).
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39. Jung, J. Y., Naleway, S. E., Yaraghi, N. A., Herrera, S., Sherman, V. R., Bushong, E. A., Ellisman, M. H., Kisailus, D., McKittrick, J., (2016), "Structural analysis of the tongue and hyoid apparatus in a woodpecker", Acta Biomater, 2016/03/24: Mar 18, 1742-7061, (DOI: 10.1016/j.actbio.2016.03.030).
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40. Hutchison, C. A., 3rd, Chuang, R. Y., Noskov, V. N., Assad-Garcia, N., Deerinck, T. J., Ellisman, M. H., Gill, J., Kannan, K., Karas, B. J., Ma, L., Pelletier, J. F., Qi, Z. Q., Richter, R. A., Strychalski, E. A., Sun, L., Suzuki, Y., Tsvetanova, B., Wise, K. S., Smith, H. O., Glass, J. I., Merryman, C., Gibson, D. G., Venter, J. C., (2016), "Design and synthesis of a minimal bacterial genome", Science, 2016/03/26, 351, 6280: pg: aad6253, Mar 25, 0036-8075, (DOI: 10.1126/science.aad6253).
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41. Funakoshi, S., Miki, K., Takaki, T., Okubo, C., Hatani, T., Chonabayashi, K., Nishikawa, M., Takei, I., Oishi, A., Narita, M., Hoshijima, M., Kimura, T., Yamanaka, S., Yoshida, Y., (2016), "Enhanced engraftment, proliferation, and therapeutic potential in heart using optimized human iPSC-derived cardiomyocytes", Sci Rep, 2016/01/09, 6: pg: 19111, 2045-2322, (DOI: 10.1038/srep19111).
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42. Ou, H. D., Deerinck, T. J., Bushong, E., Ellisman, M. H., O'Shea, C. C., (2016), "Corrigendum to 'Visualizing viral protein structures in cells using genetic probes for correlated light and electron microscopy' [Methods 90 (2015) 39-48]", Methods, 2016/05/26: May 21, 1046-2023, (DOI: 10.1016/j.ymeth.2016.05.005).
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43. Martell, J. D., Yamagata, M., Deerinck, T. J., Phan, S., Kwa, C. G., Ellisman, M. H., Sanes, J. R., Ting, A. Y., (2016), "A split horseradish peroxidase for the detection of intercellular protein-protein interactions and sensitive visualization of synapses", Nat Biotechnol, 2016/05/31: May 30, 1087-0156, (DOI: 10.1038/nbt.3563).
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44. Phan, S., Boassa, D., Nguyen, P., Wan, X., Lanman, J., Lawrence, A., Ellisman, M. H., (2016), "3D reconstruction of biological structures: automated procedures for alignment and reconstruction of multiple tilt series in electron tomography", Adv Struct Chem Imaging, 2016/08/23, 2: pg: 8, 2198-0926, (DOI: 10.1186/s40679-016-0021-2).
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45. Bouwer, J. C., Deerinck, T. J., Bushong, E., Astakhov, V., Ramachandra, R., Peltier, S. T., Ellisman, M. H., (2016), "Deceleration of probe beam by stage bias potential improves resolution of serial block-face scanning electron microscopic images", Adv Struct Chem Imaging, 2016/10/04, 2, 1: pg: 11, 2198-0926, (DOI: 10.1186/s40679-016-0025-y).
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46. Saraceno, G. E., Caceres, L. G., Guelman, L. R., Castilla, R., Udovin, L. D., Ellisman, M. H., Brocco, M. A., Capani, F., (2016), "Consequences of excessive plasticity in the hippocampus induced by perinatal asphyxia", Exp Neurol, 2016/10/23, 286: pg: 116-123, Aug 27, 0014-4886, (DOI: 10.1016/j.expneurol.2016.08.017).
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47. Pipkin, J. E., Bushong, E. A., Ellisman, M. H., Kristan, W. B., Jr., (2016), "Patterns and distribution of presynaptic and postsynaptic elements within serial electron microscopic reconstructions of neuronal arbors from the medicinal leech Hirudo verbana", J Comp Neurol, 2016/09/17, 524, 18: pg: 3677-3695, Dec 15, 0021-9967 (Print) 0021-9967, (DOI: 10.1002/cne.24120).
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48. Loh, K. H., Stawski, P. S., Draycott, A. S., Udeshi, N. D., Lehrman, E. K., Wilton, D. K., Svinkina, T., Deerinck, T. J., Ellisman, M. H., Stevens, B., Carr, S. A., Ting, A. Y., (2016), "Proteomic Analysis of Unbounded Cellular Compartments: Synaptic Clefts", Cell, 2016/08/28, 166, 5: pg: 1295-1307.e21, Aug 25, 0092-8674 (Print) 0092-8674, (DOI: 10.1016/j.cell.2016.07.041).
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49. Hu, B., Arpag, S., Zhang, X., Mobius, W., Werner, H., Sosinsky, G., Ellisman, M., Zhang, Y., Hamilton, A., Chernoff, J., Li, J., (2016), "Tuning PAK Activity to Rescue Abnormal Myelin Permeability in HNPP", PLoS Genet, 2016/09/02, 12, 9: pg: e1006290, Sep, 1553-7390, (DOI: 10.1371/journal.pgen.1006290).
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50. Taub, P. R., Ramirez-Sanchez, I., Patel, M., Higginbotham, E., Moreno-Ulloa, A., Roman-Pintos, L. M., Phillips, P., Perkins, G., Ceballos, G., Villarreal, F., (2016), "Beneficial effects of dark chocolate on exercise capacity in sedentary subjects: underlying mechanisms. A double blind, randomized, placebo controlled trial", Food Funct, 2016/08/06, 7, 9: pg: 3686-93, Sep 14, 2042-6496, (DOI: 10.1039/c6fo00611f).
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